Last updated on 2024-11-25 09:50:04 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.22.6 | 106.02 | 351.82 | 457.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.22.6 | 79.55 | 222.62 | 302.17 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.22.6 | 844.44 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.22.6 | 818.66 | OK | |||
| r-devel-windows-x86_64 | 1.22.6 | 116.00 | 271.00 | 387.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.22.6 | 113.88 | 327.00 | 440.88 | ERROR | |
| r-release-linux-x86_64 | 1.22.6 | 108.42 | 324.02 | 432.44 | ERROR | |
| r-release-macos-arm64 | 1.22.6 | 177.00 | NOTE | |||
| r-release-macos-x86_64 | 1.22.6 | 252.00 | NOTE | |||
| r-release-windows-x86_64 | 1.22.6 | 116.00 | 266.00 | 382.00 | NOTE | --no-vignettes |
| r-oldrel-macos-arm64 | 1.22.6 | 195.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.22.6 | 361.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.22.6 | 133.00 | 332.00 | 465.00 | NOTE | --no-vignettes |
Version: 1.22.6
Check: examples
Result: ERROR
Running examples in ‘netdiffuseR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: exposure
> ### Title: Ego exposure
> ### Aliases: exposure
> ### Keywords: univar
>
> ### ** Examples
>
> # Calculating lagged exposure -----------------------------------------------
>
> set.seed(8)
> graph <- rdiffnet(20, 4)
Warning in (function (graph, p, algorithm = "endpoints", both.ends = FALSE, :
The option -copy.first- is set to TRUE. In this case, the first graph will be treated as a baseline, and thus, networks after T=1 will be replaced with T-1.
>
> expo0 <- exposure(graph)
> expo1 <- exposure(graph, lags = 1)
>
> # These should be equivalent
> stopifnot(all(expo0[, -4] == expo1[, -1])) # No stop!
>
>
> # Calculating the exposure based on Structural Equivalence ------------------
> set.seed(113132)
> graph <- rdiffnet(100, 4)
Warning in (function (graph, p, algorithm = "endpoints", both.ends = FALSE, :
The option -copy.first- is set to TRUE. In this case, the first graph will be treated as a baseline, and thus, networks after T=1 will be replaced with T-1.
>
> SE <- lapply(struct_equiv(graph), "[[", "SE")
> SE <- lapply(SE, function(x) {
+ x <- 1/x
+ x[!is.finite(x)] <- 0
+ x
+ })
>
>
> # These three lines are equivalent to:
> expo_se2 <- exposure(graph, alt.graph="se", valued=TRUE)
> # Notice that we are setting valued=TRUE, but this is not necesary since when
> # alt.graph = "se" the function checks this to be setted equal to TRUE
>
> # Weighted Exposure using degree --------------------------------------------
> eDE <- exposure(graph, attrs=dgr(graph))
>
> # Which is equivalent to
> graph[["deg"]] <- dgr(graph)
> eDE2 <- exposure(graph, attrs="deg")
>
> # Comparing using incoming edges -------------------------------------------
> eIN <- exposure(graph, outgoing=FALSE)
>
> # Structral equivalence for different communities ---------------------------
> data(medInnovationsDiffNet)
>
> # Only using 4 time slides, this is for convenience
> medInnovationsDiffNet <- medInnovationsDiffNet[, , 1:4]
>
> # METHOD 1: Using the c.diffnet method:
>
> # Creating subsets by city
> cities <- unique(medInnovationsDiffNet[["city"]])
>
> diffnet <- medInnovationsDiffNet[medInnovationsDiffNet[["city"]] == cities[1]]
> diffnet[["expo_se"]] <- exposure(diffnet, alt.graph="se", valued=TRUE)
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: .M2C(newTMat(i = c(ij1[, 1], ij2[, 1]), j = c(ij1[, 2], ij2[, 2]), x = if (Generic == "+") c(e1@x, e2@x) else c(e1@x, -e2@x)))
2: .Arith.Csparse(e1, e2, .Generic, class. = "dgCMatrix")
3: d[, ids[, 1]] - d[, ids[, 2]]
4: d[, ids[, 1]] - d[, ids[, 2]]
5: euclidean_distance(gdist)
6: struct_equiv_new(geod, v)
7: struct_equiv.dgCMatrix(methods::as(graph[[i]], "dgCMatrix"), v, inf.replace, groupvar, ...)
8: struct_equiv.list(graph, v, inf.replace, groupvar, ...)
9: struct_equiv(graph, groupvar = groupvar, ...)
10: lapply(struct_equiv(graph, groupvar = groupvar, ...), "[[", "SE")
11: exposure(diffnet, alt.graph = "se", valued = TRUE)
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-patched-linux-x86_64
Version: 1.22.6
Check: examples
Result: ERROR
Running examples in ‘netdiffuseR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: exposure
> ### Title: Ego exposure
> ### Aliases: exposure
> ### Keywords: univar
>
> ### ** Examples
>
> # Calculating lagged exposure -----------------------------------------------
>
> set.seed(8)
> graph <- rdiffnet(20, 4)
Warning in (function (graph, p, algorithm = "endpoints", both.ends = FALSE, :
The option -copy.first- is set to TRUE. In this case, the first graph will be treated as a baseline, and thus, networks after T=1 will be replaced with T-1.
>
> expo0 <- exposure(graph)
> expo1 <- exposure(graph, lags = 1)
>
> # These should be equivalent
> stopifnot(all(expo0[, -4] == expo1[, -1])) # No stop!
>
>
> # Calculating the exposure based on Structural Equivalence ------------------
> set.seed(113132)
> graph <- rdiffnet(100, 4)
Warning in (function (graph, p, algorithm = "endpoints", both.ends = FALSE, :
The option -copy.first- is set to TRUE. In this case, the first graph will be treated as a baseline, and thus, networks after T=1 will be replaced with T-1.
>
> SE <- lapply(struct_equiv(graph), "[[", "SE")
> SE <- lapply(SE, function(x) {
+ x <- 1/x
+ x[!is.finite(x)] <- 0
+ x
+ })
>
>
> # These three lines are equivalent to:
> expo_se2 <- exposure(graph, alt.graph="se", valued=TRUE)
> # Notice that we are setting valued=TRUE, but this is not necesary since when
> # alt.graph = "se" the function checks this to be setted equal to TRUE
>
> # Weighted Exposure using degree --------------------------------------------
> eDE <- exposure(graph, attrs=dgr(graph))
>
> # Which is equivalent to
> graph[["deg"]] <- dgr(graph)
> eDE2 <- exposure(graph, attrs="deg")
>
> # Comparing using incoming edges -------------------------------------------
> eIN <- exposure(graph, outgoing=FALSE)
>
> # Structral equivalence for different communities ---------------------------
> data(medInnovationsDiffNet)
>
> # Only using 4 time slides, this is for convenience
> medInnovationsDiffNet <- medInnovationsDiffNet[, , 1:4]
>
> # METHOD 1: Using the c.diffnet method:
>
> # Creating subsets by city
> cities <- unique(medInnovationsDiffNet[["city"]])
>
> diffnet <- medInnovationsDiffNet[medInnovationsDiffNet[["city"]] == cities[1]]
> diffnet[["expo_se"]] <- exposure(diffnet, alt.graph="se", valued=TRUE)
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: .nextMethod(.Object = .Object, ... = ...)
2: callNextMethod()
3: initialize(value, ...)
4: initialize(value, ...)
5: new("dgTMatrix", Dim = d, Dimnames = dn, i = i, j = j, x = x)
6: newTMat(i = c(ij1[, 1], ij2[, 1]), j = c(ij1[, 2], ij2[, 2]), x = if (Generic == "+") c(e1@x, e2@x) else c(e1@x, -e2@x))
7: .M2C(newTMat(i = c(ij1[, 1], ij2[, 1]), j = c(ij1[, 2], ij2[, 2]), x = if (Generic == "+") c(e1@x, e2@x) else c(e1@x, -e2@x)))
8: .Arith.Csparse(e1, e2, .Generic, class. = "dgCMatrix")
9: d[, ids[, 1]] - d[, ids[, 2]]
10: d[, ids[, 1]] - d[, ids[, 2]]
11: euclidean_distance(gdist)
12: struct_equiv_new(geod, v)
13: struct_equiv.dgCMatrix(methods::as(graph[[i]], "dgCMatrix"), v, inf.replace, groupvar, ...)
14: struct_equiv.list(graph, v, inf.replace, groupvar, ...)
15: struct_equiv(graph, groupvar = groupvar, ...)
16: lapply(struct_equiv(graph, groupvar = groupvar, ...), "[[", "SE")
17: exposure(diffnet, alt.graph = "se", valued = TRUE)
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-release-linux-x86_64
Version: 1.22.6
Check: installed package size
Result: NOTE
installed size is 9.9Mb
sub-directories of 1Mb or more:
doc 2.5Mb
libs 5.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.22.6
Flags: --no-vignettes
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.5Mb
libs 1.5Mb
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64