fatal: Not a git repository (or any of the parent directories): .git
svn: E155007: '/usr/src/slapt-src/graphics/PyMOL/pymol' is not a working copy
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
   char *name, *type;
                ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
   char *name, *type;
         ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:652:19: warning: variable ‘atomname’ set but not used [-Wunused-but-set-variable]
       const char *atomname; 
                   ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:585:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
   molfile_qm_hessian_t *hessian_data;
                         ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘get_basis’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable ‘s_coeff2’ [-Wunused-variable]
  char s_expon[128], s_coeff1[128], s_coeff2[128];
                                    ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable ‘s_coeff1’ [-Wunused-variable]
  char s_expon[128], s_coeff1[128], s_coeff2[128];
                     ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable ‘s_expon’ [-Wunused-variable]
  char s_expon[128], s_coeff1[128], s_coeff2[128];
       ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:0:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 static vasp_plugindata_t *vasp_plugindata_malloc()
                           ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1101:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
   char word[3][BUFSIZ];
        ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2258:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
   char word[7][BUFSIZ];
        ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3561:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
   char word[6][BUFSIZ];
        ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:43:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
   double  timesteprst;
           ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:42:0:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 static vasp_plugindata_t *vasp_plugindata_malloc()
                           ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:42:0:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 static vasp_plugindata_t *vasp_plugindata_malloc()
                           ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c: In function ‘write_crd_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c:167:6: warning: ‘lfdone’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   if (!lfdone)
      ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:0:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 static vasp_plugindata_t *vasp_plugindata_malloc()
                           ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c: In function ‘read_js_structure’:
contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable ‘bszmask’ [-Wunused-variable]
     fio_size_t bszmask;
                ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:261:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   (*NSET) = *((int *) (hdrbuf));
   ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:0:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 static vasp_plugindata_t *vasp_plugindata_malloc()
                           ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:0:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 static vasp_plugindata_t *vasp_plugindata_malloc()
                           ^
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C
fatal: Not a git repository (or any of the parent directories): .git
svn: E155007: '/usr/src/slapt-src/graphics/PyMOL/pymol' is not a working copy
./
usr/
usr/lib/
usr/lib/python2.7/
usr/lib/python2.7/site-packages/
usr/lib/python2.7/site-packages/chempy/
usr/lib/python2.7/site-packages/chempy/hetatm.py
usr/lib/python2.7/site-packages/chempy/cpv.pyc
usr/lib/python2.7/site-packages/chempy/gms.py
usr/lib/python2.7/site-packages/chempy/io.py
usr/lib/python2.7/site-packages/chempy/brick.pyc
usr/lib/python2.7/site-packages/chempy/bond_mmff.pyc
usr/lib/python2.7/site-packages/chempy/charge.py
usr/lib/python2.7/site-packages/chempy/gamess1.pyc
usr/lib/python2.7/site-packages/chempy/sdf.py
usr/lib/python2.7/site-packages/chempy/protein_residues.py
usr/lib/python2.7/site-packages/chempy/map.pyc
usr/lib/python2.7/site-packages/chempy/cpv.py
usr/lib/python2.7/site-packages/chempy/pkl.py
usr/lib/python2.7/site-packages/chempy/bond_amber.pyc
usr/lib/python2.7/site-packages/chempy/bmin/
usr/lib/python2.7/site-packages/chempy/bmin/util.py
usr/lib/python2.7/site-packages/chempy/bmin/realtime.pyc
usr/lib/python2.7/site-packages/chempy/bmin/state.pyc
usr/lib/python2.7/site-packages/chempy/bmin/__init__.pyc
usr/lib/python2.7/site-packages/chempy/bmin/realtime.py
usr/lib/python2.7/site-packages/chempy/bmin/__init__.py
usr/lib/python2.7/site-packages/chempy/bmin/commands.pyc
usr/lib/python2.7/site-packages/chempy/bmin/util.pyc
usr/lib/python2.7/site-packages/chempy/bmin/commands.py
usr/lib/python2.7/site-packages/chempy/bmin/state.py
usr/lib/python2.7/site-packages/chempy/tinker/
usr/lib/python2.7/site-packages/chempy/tinker/realtime.pyc
usr/lib/python2.7/site-packages/chempy/tinker/state.pyc
usr/lib/python2.7/site-packages/chempy/tinker/amber.py
usr/lib/python2.7/site-packages/chempy/tinker/__init__.pyc
usr/lib/python2.7/site-packages/chempy/tinker/keyword.py
usr/lib/python2.7/site-packages/chempy/tinker/realtime.py
usr/lib/python2.7/site-packages/chempy/tinker/amber.pyc
usr/lib/python2.7/site-packages/chempy/tinker/__init__.py
usr/lib/python2.7/site-packages/chempy/tinker/keyword.pyc
usr/lib/python2.7/site-packages/chempy/tinker/state.py
usr/lib/python2.7/site-packages/chempy/cex.py
usr/lib/python2.7/site-packages/chempy/protein.py
usr/lib/python2.7/site-packages/chempy/bonds.py
usr/lib/python2.7/site-packages/chempy/__init__.pyc
usr/lib/python2.7/site-packages/chempy/bond_mmff.py
usr/lib/python2.7/site-packages/chempy/champ/
usr/lib/python2.7/site-packages/chempy/champ/_champ.so
usr/lib/python2.7/site-packages/chempy/champ/assign.pyc
usr/lib/python2.7/site-packages/chempy/champ/assign.py
usr/lib/python2.7/site-packages/chempy/champ/__init__.pyc
usr/lib/python2.7/site-packages/chempy/champ/formal_charges.py
usr/lib/python2.7/site-packages/chempy/champ/__init__.py
usr/lib/python2.7/site-packages/chempy/champ/amber99.py
usr/lib/python2.7/site-packages/chempy/champ/formal_charges.pyc
usr/lib/python2.7/site-packages/chempy/champ/amber99.pyc
usr/lib/python2.7/site-packages/chempy/water_residues.py
usr/lib/python2.7/site-packages/chempy/lst.py
usr/lib/python2.7/site-packages/chempy/protein_mmff.pyc
usr/lib/python2.7/site-packages/chempy/brick.py
usr/lib/python2.7/site-packages/chempy/gamess1.py
usr/lib/python2.7/site-packages/chempy/gms.pyc
usr/lib/python2.7/site-packages/chempy/__init__.py
usr/lib/python2.7/site-packages/chempy/cex.pyc
usr/lib/python2.7/site-packages/chempy/arc.pyc
usr/lib/python2.7/site-packages/chempy/mmd.pyc
usr/lib/python2.7/site-packages/chempy/mol.pyc
usr/lib/python2.7/site-packages/chempy/map.py
usr/lib/python2.7/site-packages/chempy/charge.pyc
usr/lib/python2.7/site-packages/chempy/lst.pyc
usr/lib/python2.7/site-packages/chempy/cc1.py
usr/lib/python2.7/site-packages/chempy/solvate.py
usr/lib/python2.7/site-packages/chempy/models.pyc
usr/lib/python2.7/site-packages/chempy/water_amber.py
usr/lib/python2.7/site-packages/chempy/io.pyc
usr/lib/python2.7/site-packages/chempy/cif.pyc
usr/lib/python2.7/site-packages/chempy/protein_residues.pyc
usr/lib/python2.7/site-packages/chempy/neighbor.pyc
usr/lib/python2.7/site-packages/chempy/mass.pyc
usr/lib/python2.7/site-packages/chempy/pdb.pyc
usr/lib/python2.7/site-packages/chempy/protein_amber99.pyc
usr/lib/python2.7/site-packages/chempy/xyz.pyc
usr/lib/python2.7/site-packages/chempy/hetatm.pyc
usr/lib/python2.7/site-packages/chempy/protein_mmff.py
usr/lib/python2.7/site-packages/chempy/mmd.py
usr/lib/python2.7/site-packages/chempy/mass.py
usr/lib/python2.7/site-packages/chempy/arc.py
usr/lib/python2.7/site-packages/chempy/cc1.pyc
usr/lib/python2.7/site-packages/chempy/place.py
usr/lib/python2.7/site-packages/chempy/dictdb.pyc
usr/lib/python2.7/site-packages/chempy/mae.pyc
usr/lib/python2.7/site-packages/chempy/protein_amber.py
usr/lib/python2.7/site-packages/chempy/fast/
usr/lib/python2.7/site-packages/chempy/fast/__init__.pyc
usr/lib/python2.7/site-packages/chempy/fast/__init__.py
usr/lib/python2.7/site-packages/chempy/bond_amber.py
usr/lib/python2.7/site-packages/chempy/protein.pyc
usr/lib/python2.7/site-packages/chempy/cif.py
usr/lib/python2.7/site-packages/chempy/xyz.py
usr/lib/python2.7/site-packages/chempy/mol2.py
usr/lib/python2.7/site-packages/chempy/pkl.pyc
usr/lib/python2.7/site-packages/chempy/mol2.pyc
usr/lib/python2.7/site-packages/chempy/protein_amber.pyc
usr/lib/python2.7/site-packages/chempy/place.pyc
usr/lib/python2.7/site-packages/chempy/water_residues.pyc
usr/lib/python2.7/site-packages/chempy/neighbor.py
usr/lib/python2.7/site-packages/chempy/sdf.pyc
usr/lib/python2.7/site-packages/chempy/protein_amber99.py
usr/lib/python2.7/site-packages/chempy/models.py
usr/lib/python2.7/site-packages/chempy/solvate.pyc
usr/lib/python2.7/site-packages/chempy/dictdb.py
usr/lib/python2.7/site-packages/chempy/pdb.py
usr/lib/python2.7/site-packages/chempy/fragments/
usr/lib/python2.7/site-packages/chempy/fragments/__init__.pyc
usr/lib/python2.7/site-packages/chempy/fragments/__init__.py
usr/lib/python2.7/site-packages/chempy/bonds.pyc
usr/lib/python2.7/site-packages/chempy/mae.py
usr/lib/python2.7/site-packages/chempy/mol.py
usr/lib/python2.7/site-packages/chempy/water_amber.pyc
usr/lib/python2.7/site-packages/pymol-1.8.2.1-py2.7.egg-info
usr/lib/python2.7/site-packages/pymol2/
usr/lib/python2.7/site-packages/pymol2/__init__.pyc
usr/lib/python2.7/site-packages/pymol2/__init__.py
usr/lib/python2.7/site-packages/pymol2/cmd2.py
usr/lib/python2.7/site-packages/pymol2/cmd2.pyc
usr/lib/python2.7/site-packages/pymol/
usr/lib/python2.7/site-packages/pymol/wizard/
usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py
usr/lib/python2.7/site-packages/pymol/wizard/toggle.py
usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py
usr/lib/python2.7/site-packages/pymol/wizard/label.pyc
usr/lib/python2.7/site-packages/pymol/wizard/charge.py
usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py
usr/lib/python2.7/site-packages/pymol/wizard/annotation.pyc
usr/lib/python2.7/site-packages/pymol/wizard/__init__.pyc
usr/lib/python2.7/site-packages/pymol/wizard/demo.pyc
usr/lib/python2.7/site-packages/pymol/wizard/density.pyc
usr/lib/python2.7/site-packages/pymol/wizard/measurement.py
usr/lib/python2.7/site-packages/pymol/wizard/appearance.pyc
usr/lib/python2.7/site-packages/pymol/wizard/fedora.py
usr/lib/python2.7/site-packages/pymol/wizard/renaming.py
usr/lib/python2.7/site-packages/pymol/wizard/sculpting.pyc
usr/lib/python2.7/site-packages/pymol/wizard/toggle.pyc
usr/lib/python2.7/site-packages/pymol/wizard/__init__.py
usr/lib/python2.7/site-packages/pymol/wizard/label.py
usr/lib/python2.7/site-packages/pymol/wizard/cleanup.pyc
usr/lib/python2.7/site-packages/pymol/wizard/box.py
usr/lib/python2.7/site-packages/pymol/wizard/charge.pyc
usr/lib/python2.7/site-packages/pymol/wizard/security.pyc
usr/lib/python2.7/site-packages/pymol/wizard/command.py
usr/lib/python2.7/site-packages/pymol/wizard/command.pyc
usr/lib/python2.7/site-packages/pymol/wizard/appearance.py
usr/lib/python2.7/site-packages/pymol/wizard/distance.py
usr/lib/python2.7/site-packages/pymol/wizard/filter.pyc
usr/lib/python2.7/site-packages/pymol/wizard/demo.py
usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.pyc
usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.pyc
usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py
usr/lib/python2.7/site-packages/pymol/wizard/dragging.pyc
usr/lib/python2.7/site-packages/pymol/wizard/filter.py
usr/lib/python2.7/site-packages/pymol/wizard/benchmark.pyc
usr/lib/python2.7/site-packages/pymol/wizard/fedora.pyc
usr/lib/python2.7/site-packages/pymol/wizard/distance.pyc
usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.pyc
usr/lib/python2.7/site-packages/pymol/wizard/message.py
usr/lib/python2.7/site-packages/pymol/wizard/box.pyc
usr/lib/python2.7/site-packages/pymol/wizard/annotation.py
usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py
usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py
usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.pyc
usr/lib/python2.7/site-packages/pymol/wizard/renaming.pyc
usr/lib/python2.7/site-packages/pymol/wizard/security.py
usr/lib/python2.7/site-packages/pymol/wizard/measurement.pyc
usr/lib/python2.7/site-packages/pymol/wizard/density.py
usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py
usr/lib/python2.7/site-packages/pymol/wizard/dragging.py
usr/lib/python2.7/site-packages/pymol/wizard/message.pyc
usr/lib/python2.7/site-packages/pymol/parsing.pyc
usr/lib/python2.7/site-packages/pymol/keywords.pyc
usr/lib/python2.7/site-packages/pymol/util.py
usr/lib/python2.7/site-packages/pymol/xwin.pyc
usr/lib/python2.7/site-packages/pymol/movie.pyc
usr/lib/python2.7/site-packages/pymol/api.pyc
usr/lib/python2.7/site-packages/pymol/gui.py
usr/lib/python2.7/site-packages/pymol/selecting.pyc
usr/lib/python2.7/site-packages/pymol/computing.py
usr/lib/python2.7/site-packages/pymol/menu.pyc
usr/lib/python2.7/site-packages/pymol/feedingback.pyc
usr/lib/python2.7/site-packages/pymol/controlling.py
usr/lib/python2.7/site-packages/pymol/callback.py
usr/lib/python2.7/site-packages/pymol/keyboard.pyc
usr/lib/python2.7/site-packages/pymol/checking.pyc
usr/lib/python2.7/site-packages/pymol/movie.py
usr/lib/python2.7/site-packages/pymol/querying.pyc
usr/lib/python2.7/site-packages/pymol/headering.pyc
usr/lib/python2.7/site-packages/pymol/m4x.pyc
usr/lib/python2.7/site-packages/pymol/setting.py
usr/lib/python2.7/site-packages/pymol/checking.py
usr/lib/python2.7/site-packages/pymol/fitting.py
usr/lib/python2.7/site-packages/pymol/pymol_path/
usr/lib/python2.7/site-packages/pymol/pymol_path/LICENSE
usr/lib/python2.7/site-packages/pymol/pymol_path/data/
usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/
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usr/lib/python2.7/site-packages/pymol/pymol_path/examples/package/redhat/pymol-0.96-1.rh72.py21.spec
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/package/redhat/pymol-0.93-1.rh90.py22.spec
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usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/
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usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/build_peptide.py
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/contact.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/packsurf.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/scenes2movie.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/ref_frame.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/density.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/dali.py
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/area_diff.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/ss_xfer.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/seq_match_sele.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/multiclip_ray.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/groel_es.pml
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/ribosome.pml
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usr/lib/python2.7/site-packages/pymol/pymol_path/examples/cookbook/symsph.py
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/
usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo03.py
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usr/lib/python2.7/site-packages/pymol/experimenting.pyc
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usr/lib/python2.7/site-packages/pymol/moving.py
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usr/lib/python2.7/site-packages/pymol/cmd.pyc
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usr/lib/python2.7/site-packages/pmg_tk/
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usr/lib/python2.7/site-packages/pmg_tk/Demo.py
usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py
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usr/lib/python2.7/site-packages/pmg_tk/SetEditor.pyc
usr/lib/python2.7/site-packages/pmg_tk/Setting.pyc
usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py
usr/lib/python2.7/site-packages/pmg_tk/TextEditor.pyc
usr/lib/python2.7/site-packages/pmg_tk/Setting.py
usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc
usr/lib/python2.7/site-packages/pmg_tk/Demo.pyc
usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py
usr/lib/python2.7/site-packages/pmg_tk/volume.pyc
usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyc
usr/lib/python2.7/site-packages/pmg_tk/skins/
usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.pyc
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usr/lib/python2.7/site-packages/pmg_tk/skins/demo/
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usr/lib/python2.7/site-packages/pmg_tk/skins/normal/
usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyc
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usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py
usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py
usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.pyc
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usr/lib/python2.7/site-packages/pmg_tk/startup/
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usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.pyc
usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.py
usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py
usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.pyc
usr/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py
usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.pyc
usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py
usr/lib/python2.7/site-packages/web/
usr/lib/python2.7/site-packages/web/__init__.pyc
usr/lib/python2.7/site-packages/web/__init__.py
usr/lib/python2.7/site-packages/web/pymolhttpd.py
usr/lib/python2.7/site-packages/web/examples/
usr/lib/python2.7/site-packages/web/examples/justhttpd.py
usr/lib/python2.7/site-packages/web/examples/__init__.pyc
usr/lib/python2.7/site-packages/web/examples/__init__.py
usr/lib/python2.7/site-packages/web/examples/justhttpd.pyc
usr/lib/python2.7/site-packages/web/pymolhttpd.pyc
usr/lib/python2.7/site-packages/pmg_wx/
usr/lib/python2.7/site-packages/pmg_wx/__init__.pyc
usr/lib/python2.7/site-packages/pmg_wx/__init__.py
usr/bin/
usr/bin/pymol
usr/doc/
usr/doc/PyMOL-1.8.2.1/
usr/doc/PyMOL-1.8.2.1/README
usr/doc/PyMOL-1.8.2.1/LICENSE
usr/doc/PyMOL-1.8.2.1/COPYING
usr/doc/PyMOL-1.8.2.1/AUTHORS
usr/doc/PyMOL-1.8.2.1/PyMOL.SlackBuild
usr/doc/PyMOL-1.8.2.1/ChangeLog
usr/share/
usr/share/applications/
usr/share/applications/PyMOL.desktop
usr/share/pixmaps/
usr/share/pixmaps/pymol.png
install/
install/doinst.sh
install/slack-desc
thon2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-i686-2.7/layer0/Tetsurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-i686-2.7/layer0/Texture.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-i686-2.7/layer0/File.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-i686-2.7/layer0/Map.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-i686-2.7/layer0/Pixmap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-i686-2.7/layer0/Tracker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-i686-2.7/layer0/Match.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-i686-2.7/layer0/Field.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-i686-2.7/layer0/ShaderMgr.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-i686-2.7/layer0/Queue.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-i686-2.7/layer0/Vector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-i686-2.7/layer0/Sphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-i686-2.7/layer0/MemoryCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-i686-2.7/layer0/Util2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-i686-2.7/layer0/Block.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-i686-2.7/layer0/Crystal.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-i686-2.7/layer0/MyPNG.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-i686-2.7/layer0/MemoryDebug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-i686-2.7/layer0/Matrix.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-i686-2.7/layer0/os_gl.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Raw.cpp -o build/temp.linux-i686-2.7/layer0/Raw.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-i686-2.7/layer0/Deferred.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-i686-2.7/layer0/Parse.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-i686-2.7/layer0/Word.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-i686-2.7/layer0/Feedback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-i686-2.7/layer1/Wizard.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-i686-2.7/layer0/Err.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-i686-2.7/layer1/Basis.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-i686-2.7/layer1/COLLADA.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-i686-2.7/layer0/Isosurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-i686-2.7/layer1/Ray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-i686-2.7/layer1/FontType.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-i686-2.7/layer1/Symmetry.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel12.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-i686-2.7/layer1/Extrude.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-i686-2.7/layer1/Character.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-i686-2.7/layer1/Scene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-i686-2.7/layer1/Setting.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel10.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-i686-2.7/layer1/Seq.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-i686-2.7/layer1/Text.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT8x13.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-i686-2.7/layer2/RepCartoon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-i686-2.7/layer2/SideChainHelper.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-i686-2.7/layer1/PyMOLObject.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-i686-2.7/layer2/RepAngle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-i686-2.7/layer1/Font.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGroup.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT9x15.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-i686-2.7/layer2/GadgetSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-i686-2.7/layer1/CGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-i686-2.7/layer2/CoordSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-i686-2.7/layer2/ObjectVolume.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-i686-2.7/layer2/AtomInfo.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-i686-2.7/layer1/Shaker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-i686-2.7/layer2/CifMoleculeReader.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-i686-2.7/layer1/Control.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-i686-2.7/layer1/Pop.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-i686-2.7/layer1/Ortho.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-i686-2.7/layer1/Color.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-i686-2.7/layer1/Movie.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-i686-2.7/layer2/BondTypeHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel18.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-i686-2.7/layer1/Rep.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-i686-2.7/layer2/DistSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-i686-2.7/layer1/TypeFace.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-i686-2.7/layer1/P.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-i686-2.7/layer2/Mol2Typing.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-i686-2.7/layer2/CifFile.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-i686-2.7/layer2/RepDistDash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-i686-2.7/layer1/PConv.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMolecule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-i686-2.7/layer1/ScrollBar.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-i686-2.7/layer1/ButMode.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-i686-2.7/layer1/View.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-i686-2.7/layer2/Sculpt.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-i686-2.7/layer2/RepSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-i686-2.7/layer2/ObjectSlice.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-i686-2.7/layer2/ObjectCGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-i686-2.7/layer2/AtomInfoHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-i686-2.7/layer2/ObjectSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-i686-2.7/layer2/RepDihedral.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-i686-2.7/layer2/RepLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-i686-2.7/layer2/RepNonbonded.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-i686-2.7/layer2/RepWireBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGadget.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i686-2.7/layer2/RepNonbondedSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-i686-2.7/layer2/RepMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-i686-2.7/layer2/RepRibbon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-i686-2.7/layer2/RepDot.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-i686-2.7/layer2/ObjectDist.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-i686-2.7/layer3/Seeker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-i686-2.7/layer2/ObjectAlignment.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMolecule2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-i686-2.7/layer3/MovieScene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-i686-2.7/layer2/RepSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-i686-2.7/layer4/PopUp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGadgetRamp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-i686-2.7/layer4/Menu.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-i686-2.7/layer4/Cmd.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-i686-2.7/layer2/RepDistLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-i686-2.7/layer2/RepEllipsoid.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-i686-2.7/layer2/RepCylBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-i686-2.7/layer4/Export.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-i686-2.7/layer2/VFont.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-i686-2.7/layer5/TestPyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-i686-2.7/layer2/SculptCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-i686-2.7/layer5/main.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-i686-2.7/layer2/ObjectCallback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-i686-2.7/layer5/PyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-i686-2.7/layer3/Selector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i686-2.7/modules/cealign/src/ccealignmodule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o build/temp.linux-i686-2.7/build/generated/ShaderText.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-i686-2.7/layer3/PlugIOManager.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-i686-2.7/layer3/AtomIterators.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-i686-2.7/layer3/Editor.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-i686-2.7/layer3/Executive.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/X11/include -I/usr/X11/include/freetype2 -I/usr/X11/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
g++ -pthread -shared -O2 -march=i486 -mtune=i686 -std=c++11 build/temp.linux-i686-2.7/ov/src/OVHeap.o build/temp.linux-i686-2.7/ov/src/OVOneToAny.o build/temp.linux-i686-2.7/ov/src/OVContext.o build/temp.linux-i686-2.7/ov/src/OVRandom.o build/temp.linux-i686-2.7/ov/src/OVOneToOne.o build/temp.linux-i686-2.7/ov/src/OVLexicon.o build/temp.linux-i686-2.7/ov/src/OVHeapArray.o build/temp.linux-i686-2.7/ov/src/ov_utility.o build/temp.linux-i686-2.7/layer0/Tetsurf.o build/temp.linux-i686-2.7/layer0/Texture.o build/temp.linux-i686-2.7/layer0/Pixmap.o build/temp.linux-i686-2.7/layer0/Tracker.o build/temp.linux-i686-2.7/layer0/Match.o build/temp.linux-i686-2.7/layer0/ShaderMgr.o build/temp.linux-i686-2.7/layer0/MemoryCache.o build/temp.linux-i686-2.7/layer0/Util2.o build/temp.linux-i686-2.7/layer0/Crystal.o build/temp.linux-i686-2.7/layer0/MemoryDebug.o build/temp.linux-i686-2.7/layer0/os_gl.o build/temp.linux-i686-2.7/layer0/Raw.o build/temp.linux-i686-2.7/layer0/Deferred.o build/temp.linux-i686-2.7/layer0/Parse.o build/temp.linux-i686-2.7/layer0/Word.o build/temp.linux-i686-2.7/layer0/Feedback.o build/temp.linux-i686-2.7/layer0/Util.o build/temp.linux-i686-2.7/layer0/Debug.o build/temp.linux-i686-2.7/layer0/Triangle.o build/temp.linux-i686-2.7/layer0/File.o build/temp.linux-i686-2.7/layer0/Map.o build/temp.linux-i686-2.7/layer0/Field.o build/temp.linux-i686-2.7/layer0/Queue.o build/temp.linux-i686-2.7/layer0/Vector.o build/temp.linux-i686-2.7/layer0/Sphere.o build/temp.linux-i686-2.7/layer0/Block.o build/temp.linux-i686-2.7/layer0/MyPNG.o build/temp.linux-i686-2.7/layer0/Matrix.o build/temp.linux-i686-2.7/layer0/Err.o build/temp.linux-i686-2.7/layer0/Isosurf.o build/temp.linux-i686-2.7/layer1/FontType.o build/temp.linux-i686-2.7/layer1/Symmetry.o build/temp.linux-i686-2.7/layer1/FontGLUTHel12.o build/temp.linux-i686-2.7/layer1/Extrude.o build/temp.linux-i686-2.7/layer1/Character.o build/temp.linux-i686-2.7/layer1/Scene.o build/temp.linux-i686-2.7/layer1/FontGLUTHel10.o build/temp.linux-i686-2.7/layer1/Seq.o build/temp.linux-i686-2.7/layer1/Text.o build/temp.linux-i686-2.7/layer1/FontGLUT8x13.o build/temp.linux-i686-2.7/layer1/Wizard.o build/temp.linux-i686-2.7/layer1/Basis.o build/temp.linux-i686-2.7/layer1/COLLADA.o build/temp.linux-i686-2.7/layer1/Ray.o build/temp.linux-i686-2.7/layer1/Setting.o build/temp.linux-i686-2.7/layer1/PyMOLObject.o build/temp.linux-i686-2.7/layer1/Font.o build/temp.linux-i686-2.7/layer1/FontGLUT.o build/temp.linux-i686-2.7/layer1/FontGLUT9x15.o build/temp.linux-i686-2.7/layer1/CGO.o build/temp.linux-i686-2.7/layer1/Shaker.o build/temp.linux-i686-2.7/layer1/Control.o build/temp.linux-i686-2.7/layer1/Pop.o build/temp.linux-i686-2.7/layer1/Ortho.o build/temp.linux-i686-2.7/layer1/Color.o build/temp.linux-i686-2.7/layer1/Movie.o build/temp.linux-i686-2.7/layer1/FontGLUTHel18.o build/temp.linux-i686-2.7/layer1/Rep.o build/temp.linux-i686-2.7/layer1/TypeFace.o build/temp.linux-i686-2.7/layer1/P.o build/temp.linux-i686-2.7/layer1/PConv.o build/temp.linux-i686-2.7/layer1/ScrollBar.o build/temp.linux-i686-2.7/layer1/ButMode.o build/temp.linux-i686-2.7/layer1/View.o build/temp.linux-i686-2.7/layer2/RepCartoon.o build/temp.linux-i686-2.7/layer2/SideChainHelper.o build/temp.linux-i686-2.7/layer2/RepAngle.o build/temp.linux-i686-2.7/layer2/ObjectGroup.o build/temp.linux-i686-2.7/layer2/GadgetSet.o build/temp.linux-i686-2.7/layer2/CoordSet.o build/temp.linux-i686-2.7/layer2/ObjectVolume.o build/temp.linux-i686-2.7/layer2/AtomInfo.o build/temp.linux-i686-2.7/layer2/CifMoleculeReader.o build/temp.linux-i686-2.7/layer2/BondTypeHistory.o build/temp.linux-i686-2.7/layer2/DistSet.o build/temp.linux-i686-2.7/layer2/Mol2Typing.o build/temp.linux-i686-2.7/layer2/CifFile.o build/temp.linux-i686-2.7/layer2/RepDistDash.o build/temp.linux-i686-2.7/layer2/ObjectMolecule.o build/temp.linux-i686-2.7/layer2/ObjectSlice.o build/temp.linux-i686-2.7/layer2/AtomInfoHistory.o build/temp.linux-i686-2.7/layer2/ObjectSurface.o build/temp.linux-i686-2.7/layer2/RepDihedral.o build/temp.linux-i686-2.7/layer2/RepLabel.o build/temp.linux-i686-2.7/layer2/RepNonbonded.o build/temp.linux-i686-2.7/layer2/ObjectGadget.o build/temp.linux-i686-2.7/layer2/RepMesh.o build/temp.linux-i686-2.7/layer2/RepDot.o build/temp.linux-i686-2.7/layer2/Sculpt.o build/temp.linux-i686-2.7/layer2/RepSurface.o build/temp.linux-i686-2.7/layer2/ObjectCGO.o build/temp.linux-i686-2.7/layer2/ObjectMap.o build/temp.linux-i686-2.7/layer2/RepWireBond.o build/temp.linux-i686-2.7/layer2/RepNonbondedSphere.o build/temp.linux-i686-2.7/layer2/RepRibbon.o build/temp.linux-i686-2.7/layer2/ObjectDist.o build/temp.linux-i686-2.7/layer2/ObjectAlignment.o build/temp.linux-i686-2.7/layer2/ObjectMolecule2.o build/temp.linux-i686-2.7/layer2/RepSphere.o build/temp.linux-i686-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-i686-2.7/layer2/RepDistLabel.o build/temp.linux-i686-2.7/layer2/ObjectMesh.o build/temp.linux-i686-2.7/layer2/RepEllipsoid.o build/temp.linux-i686-2.7/layer2/RepCylBond.o build/temp.linux-i686-2.7/layer2/VFont.o build/temp.linux-i686-2.7/layer2/SculptCache.o build/temp.linux-i686-2.7/layer2/ObjectCallback.o build/temp.linux-i686-2.7/layer3/Selector.o build/temp.linux-i686-2.7/layer3/PlugIOManager.o build/temp.linux-i686-2.7/layer3/AtomIterators.o build/temp.linux-i686-2.7/layer3/Editor.o build/temp.linux-i686-2.7/layer3/Executive.o build/temp.linux-i686-2.7/layer3/Seeker.o build/temp.linux-i686-2.7/layer3/MovieScene.o build/temp.linux-i686-2.7/layer4/PopUp.o build/temp.linux-i686-2.7/layer4/Menu.o build/temp.linux-i686-2.7/layer4/Cmd.o build/temp.linux-i686-2.7/layer4/Export.o build/temp.linux-i686-2.7/layer5/TestPyMOL.o build/temp.linux-i686-2.7/layer5/main.o build/temp.linux-i686-2.7/layer5/PyMOL.o build/temp.linux-i686-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-i686-2.7/build/generated/ShaderText.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -L/usr/lib -L/usr/X11/lib -L/usr/lib -lxml2 -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -lpython2.7 -o build/lib.linux-i686-2.7/pymol/_cmd.so
building 'chempy.champ._champ' extension
creating build/temp.linux-i686-2.7/contrib/champ
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-i686-2.7/contrib/champ/sort.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-i686-2.7/contrib/champ/os_memory.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-i686-2.7/contrib/champ/chiral.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-i686-2.7/contrib/champ/champ.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-i686-2.7/contrib/champ/feedback2.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-i686-2.7/contrib/champ/list.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-i686-2.7/contrib/champ/vla.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-i686-2.7/contrib/champ/champ_module.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-i686-2.7/contrib/champ/err2.o
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=i486 -mtune=i686 -std=c++11 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-i686-2.7/contrib/champ/strblock.o
gcc -pthread -shared -O2 -march=i486 -mtune=i686 -std=c++11 build/temp.linux-i686-2.7/contrib/champ/sort.o build/temp.linux-i686-2.7/contrib/champ/chiral.o build/temp.linux-i686-2.7/contrib/champ/os_memory.o build/temp.linux-i686-2.7/contrib/champ/champ.o build/temp.linux-i686-2.7/contrib/champ/feedback2.o build/temp.linux-i686-2.7/contrib/champ/list.o build/temp.linux-i686-2.7/contrib/champ/vla.o build/temp.linux-i686-2.7/contrib/champ/champ_module.o build/temp.linux-i686-2.7/contrib/champ/err2.o build/temp.linux-i686-2.7/contrib/champ/strblock.o -L/usr/lib -lpython2.7 -o build/lib.linux-i686-2.7/chempy/champ/_champ.so
running install
running build
running build_py
running build_ext
running install_lib
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/hetatm.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/gms.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/io.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/charge.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/sdf.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein_residues.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/cpv.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/pkl.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/util.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/realtime.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/commands.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/state.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/amber.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/keyword.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/realtime.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/state.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/cex.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/bonds.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/bond_mmff.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/_champ.so -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/assign.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/formal_charges.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/amber99.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/water_residues.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/lst.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/brick.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/gamess1.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/map.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/cc1.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/solvate.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/water_amber.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein_mmff.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mmd.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mass.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/arc.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/place.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein_amber.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/fast
copying build/lib.linux-i686-2.7/chempy/fast/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/fast
copying build/lib.linux-i686-2.7/chempy/bond_amber.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/cif.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/xyz.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mol2.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/neighbor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein_amber99.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/models.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/dictdb.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/pdb.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/fragments
copying build/lib.linux-i686-2.7/chempy/fragments/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/fragments
copying build/lib.linux-i686-2.7/chempy/mae.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mol.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol2
copying build/lib.linux-i686-2.7/pymol2/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol2
copying build/lib.linux-i686-2.7/pymol2/cmd2.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol2
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/pair_fit.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/toggle.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/cleanup.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/charge.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/mutagenesis.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/measurement.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/fedora.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/renaming.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/label.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/box.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/command.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/appearance.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/distance.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/demo.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/pseudoatom.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/filter.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/message.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/annotation.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/sculpting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/stereodemo.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/security.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/density.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/benchmark.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/dragging.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/util.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/gui.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/computing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/controlling.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/callback.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/movie.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/setting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/checking.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/fitting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/completing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/monitoring.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/internal.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/selector.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/povray.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/_cmd.so -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/embed
copying build/lib.linux-i686-2.7/pymol/embed/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/embed
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/embed/wxpymol
copying build/lib.linux-i686-2.7/pymol/embed/wxpymol/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/embed/wxpymol
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/embed/epymol
copying build/lib.linux-i686-2.7/pymol/embed/epymol/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/embed/epymol
copying build/lib.linux-i686-2.7/pymol/menu.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/keyboard.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/locking.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/editor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/keywords.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/colorramping.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/preset.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/helping.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/parsing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/xray.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/selecting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/exporting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/morphing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/xwin.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/shortcut.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/constants_palette.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/experimenting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/wizarding.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/creating.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/opengl
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/opengl/gl
copying build/lib.linux-i686-2.7/pymol/opengl/gl/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/opengl/gl
copying build/lib.linux-i686-2.7/pymol/opengl/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/opengl
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/opengl/glu
copying build/lib.linux-i686-2.7/pymol/opengl/glu/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/opengl/glu
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/opengl/glut
copying build/lib.linux-i686-2.7/pymol/opengl/glut/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/opengl/glut
copying build/lib.linux-i686-2.7/pymol/m4x.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/cgo.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/api.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/viewing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/rpc.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/commanding.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/legacysupport.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/managergui.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/repository.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/installation.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/editing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/parser.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/vfont.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/constants.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/feedingback.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/moving.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/externing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/contrib
copying build/lib.linux-i686-2.7/pymol/contrib/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/contrib
copying build/lib.linux-i686-2.7/pymol/headering.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/invocation.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/cmd.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/querying.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/importing.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/volume.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/ColorEditor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/Demo.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/TextEditor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/PMGApp.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/Setting.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/SetEditor.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/skins
copying build/lib.linux-i686-2.7/pmg_tk/skins/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/skins
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/skins/demo
copying build/lib.linux-i686-2.7/pmg_tk/skins/demo/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/skins/demo
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/ModalWindow.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/builder.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/skins/normal
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.linux-i686-2.7/pmg_tk/startup/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.linux-i686-2.7/pmg_tk/startup/apbs_tools.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.linux-i686-2.7/pmg_tk/startup/remote_pdb_load.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.linux-i686-2.7/pmg_tk/PyMOLMapLoad.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_tk
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/web
copying build/lib.linux-i686-2.7/web/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/web
copying build/lib.linux-i686-2.7/web/pymolhttpd.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/web
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/web/examples
copying build/lib.linux-i686-2.7/web/examples/justhttpd.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/web/examples
copying build/lib.linux-i686-2.7/web/examples/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/web/examples
creating /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_wx
copying build/lib.linux-i686-2.7/pmg_wx/__init__.py -> /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pmg_wx
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/gms.py to gms.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/io.py to io.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/charge.py to charge.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/sdf.py to sdf.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/cpv.py to cpv.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/pkl.py to pkl.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin/util.py to util.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bmin/state.py to state.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/tinker/state.py to state.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/cex.py to cex.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/protein.py to protein.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bonds.py to bonds.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ/assign.py to assign.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/lst.py to lst.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/brick.py to brick.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/__init__.py to __init__.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/map.py to map.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/cc1.py to cc1.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/solvate.py to solvate.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/mmd.py to mmd.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/mass.py to mass.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/arc.py to arc.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/place.py to place.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/cif.py to cif.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/xyz.py to xyz.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/mol2.py to mol2.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/models.py to models.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/pdb.py to pdb.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/mae.py to mae.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/chempy/mol.py to mol.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol2/__init__.py to __init__.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/label.py to label.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/box.py to box.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/command.py to command.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/message.py to message.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/security.py to security.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/density.py to density.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/util.py to util.pyc
byte-compiling /usr/src/slapt-src/graphics/PyMOL/package-PyMOL/usr/lib/python2.7/site-packages/pymol/gui.py to gui.pyc
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Searching for symbolic links:

No symbolic links were found, so we won't make an installation script.
You can make your own later in ./install/doinst.sh and rebuild the
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Creating Slackware package:  /usr/src/slapt-src/graphics/PyMOL/PyMOL-1.8.2.1-i486-1salix.txz

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Slackware package /usr/src/slapt-src/graphics/PyMOL/PyMOL-1.8.2.1-i486-1salix.txz created.

Installing package PyMOL-1.8.2.1-i486-1salix...
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| PyMOL (molecular visualization system)
| 
| PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D
| visualization of proteins, small molecules, density, surfaces, and
| trajectories. It also includes molecular editing, ray tracing, and
| movies.
| 
| Homepage: http://pymol.org
| 
| 
| 
| 
|