seqloc-0.6.1.1: Handle sequence locations for bioinformatics

Safe HaskellNone
LanguageHaskell2010

Bio.SeqLoc.SpliceLocation

Contents

Description

Data type for a more general sequence location consiting of disjoint ranges of positions on a sequence.

Throughout, sequence position refers to a Pos which includes a strand, as opposed to an offset, which refers to a Offset with no strand.

Synopsis

Sequence locations

data SpliceLoc #

General (disjoint) sequence region consisting of a concatenated set of one or more contiguous regions.

Instances

Eq SpliceLoc # 
Ord SpliceLoc # 
Show SpliceLoc # 
Stranded SpliceLoc # 
LocRepr SpliceLoc # 
Location SpliceLoc # 
Locatable SpliceSeqLoc # 

contigSpan :: SpliceLoc -> ContigLoc #

Return the contiguous location spanned by the spliced location.