Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation (Schliep 2011). Offers methods for tree comparison,
model selection and visualization of phylogenetic networks as described in
Schliep et al. (2017).
| Version: |
2.12.1 |
| Depends: |
ape (≥ 5.8), R (≥ 4.1.0) |
| Imports: |
digest, fastmatch, generics, graphics, grDevices, igraph (≥
1.0), Matrix, methods, parallel, quadprog, Rcpp, stats, utils |
| LinkingTo: |
Rcpp |
| Suggests: |
apex, Biostrings, ggseqlogo, ggplot2, knitr, magick, rgl, rmarkdown, seqinr, testthat (≥ 3.0.0), tinytest, vdiffr, xtable |
| Published: |
2024-09-17 |
| DOI: |
10.32614/CRAN.package.phangorn |
| Author: |
Klaus Schliep 
[aut, cre],
Emmanuel Paradis
[aut],
Leonardo de Oliveira Martins
[aut],
Alastair Potts [aut],
Iris Bardel-Kahr
[aut],
Tim W. White [ctb],
Cyrill Stachniss [ctb],
Michelle Kendall [ctb],
Keren Halabi [ctb],
Richel Bilderbeek [ctb],
Kristin Winchell [ctb],
Liam Revell [ctb],
Mike Gilchrist [ctb],
Jeremy Beaulieu [ctb],
Brian O'Meara [ctb],
Long Qu [ctb],
Joseph Brown
[ctb],
Santiago Claramunt
[ctb] |
| Maintainer: |
Klaus Schliep <klaus.schliep at gmail.com> |
| BugReports: |
https://github.com/KlausVigo/phangorn/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://github.com/KlausVigo/phangorn,
https://klausvigo.github.io/phangorn/ |
| NeedsCompilation: |
yes |
| Language: |
en-US |
| Citation: |
phangorn citation info |
| Materials: |
README NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
phangorn results |