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Welcome to ftp.nluug.nl Current directory: /pub/os/Linux/distr/salix/x86_64/extra-15.0/source/academic/bowtie/ |
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Contents of README:Bowtie is an ultrafast, memory-efficient short read aligner geared toward quickly aligning large sets of short DNA sequences (reads) to large genomes. It aligns 35-base-pair reads to the human genome at a rate of 25 million reads per hour on a typical workstation. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: for the human genome, the index is typically about 2.2GB (for unpaired alignment) or 2.9GB (for paired-end or colorspace alignment). Multiple processors can be used simultaneously to achieve greater alignment speed. Bowtie can also output alignments in the standard SAM format, allowing Bowtie to interoperate with other tools supporting SAM, including the SAMtools consensus, SNP, and indel callers. If you use Bowtie for your published research, please cite: Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25. |
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Parent Directory -
patches/ 03-Jun-2022 16:48 -
README 03-Jun-2022 16:48 967
References 03-Jun-2022 16:48 210
bowtie-1.3.0-src.zip 03-Jun-2022 16:48 7.1M
bowtie.SlackBuild 17-Mar-2022 18:33 3.4K
bowtie.info 03-Jun-2022 16:48 340
slack-desc 03-Jun-2022 16:48 859
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